PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011076777.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 258aa    MW: 28117.9 Da    PI: 6.7562
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011076777.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260911.4e-284107199
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C+l+p++     p++q++++ +++k++G++ +++l++a p++ ++++++sl+yeA+ r+ +Pv+G+vg++ ++++  +++
  XP_011076777.1   4 SCNGCRVLRKGCSQNCTLRPCLqwiksPESQANATLFLAKFYGRAGLINLINAGPTHLHPEIFRSLLYEACGRIINPVHGSVGLMCSGNWPRCHA 98 
                     6********************************************************************************************** PP

          DUF260  91 kaelallke 99 
                     ++e++l+++
  XP_011076777.1  99 AVEAVLQGA 107
                     *99998876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089115.5383109IPR004883Lateral organ boundaries, LOB
PfamPF031957.0E-234103IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSQNCT LRPCLQWIKS PESQANATLF LAKFYGRAGL INLINAGPTH  60
LHPEIFRSLL YEACGRIINP VHGSVGLMCS GNWPRCHAAV EAVLQGAPLV MQLPGEDDSA  120
ADPQGCDIRH LSKDSSTSLR RIRTRNRFKR SATHAKTQVD SITADLVMSE SEGNFTITGW  180
DCGEDSKNFG GDLKRPPSRD SFSVETVEPA LANRNEQPAL GVKPEELTSE IGLDLTLGMN  240
PGLQAYMATV IEISDSET
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011076777.10.0PREDICTED: LOB domain-containing protein 42-like
SwissprotQ9M8864e-68LBD41_ARATH; LOB domain-containing protein 41
TrEMBLA0A022REY61e-123A0A022REY6_ERYGU; Uncharacterized protein
STRINGPGSC0003DMT4000377112e-87(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8862494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.12e-69LOB domain-containing protein 41